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Algo Class Reference

#include <algo.h>

Inheritance diagram for Algo:

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Collaboration diagram for Algo:

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List of all members.

Public Member Functions

 Algo (TrapperDoc *pDoc_, std::set< db_recno_t > &recnoList, AlgoParam *param=0, QObject *parent=0, const char *name=0)
virtual ~Algo ()
virtual void start ()=0
void select (db_recno_t recno, bool status)

Protected Attributes

std::set< db_recno_t > & selectedReads
TrapperDoc * pDoc
AlgoParam * my_param

Detailed Description

Definition at line 30 of file algo.h.

Constructor & Destructor Documentation

Algo::Algo (  TrapperDoc *  pDoc_,
std::set< db_recno_t > &  recnoList,
AlgoParam *  param = 0,
QObject *  parent = 0,
const char *  name = 0
) 
 

Algo::~Algo (   )  [virtual]
 

Definition at line 27 of file algo.cpp.

00028 {}

Member Function Documentation

void Algo::select (  db_recno_t  recno,
bool  status
) 
 

Definition at line 30 of file algo.cpp.

References selectedReads.

00031 {
00032   set<db_recno_t>::iterator pos;
00033   if ( status == true )
00034     selectedReads.insert( recno );
00035   else if ( ( pos = selectedReads.find( recno )) != selectedReads.end() ) {
00036     selectedReads.erase( pos );
00037   }
00038   
00039 }

virtual void Algo::start (   )  [pure virtual]
 

Implemented in AceWriter, ConsAlgo, DnpAlgo, DnpSearchAlgo, DnpSortAlgo, FindMatesAlgo, MoveAlgo, PrintAlgo, RAlgo, ReadListAlgo, ReadnamesAlgo, RealignerAlgo, RemoveAlgo, RWAlgo, SortAlgo, StrandsAlgo, SubsetAlgo, TrashAlgo, and TrashRemoveAlgo.

Referenced by TrapperView::runAlgo().

Member Data Documentation

AlgoParam* Algo::my_param [protected]
 

Definition at line 42 of file algo.h.

Referenced by SubsetAlgo::start(), ReadnamesAlgo::start(), MoveAlgo::start(), and ConsAlgo::start().

TrapperDoc* Algo::pDoc [protected]
 

Definition at line 41 of file algo.h.

Referenced by MoveAlgo::start(), and FindMatesAlgo::start().

std::set< db_recno_t >& Algo::selectedReads [protected]
 

Definition at line 40 of file algo.h.

Referenced by select(), MoveAlgo::start(), FindMatesAlgo::start(), and DnpSortAlgo::start().

The documentation for this class was generated from the following files:
Generated on Fri Mar 17 17:44:57 2006 for trapper by  doxygen 1.4.4