| AceWriter(TrapperDoc *pDoc_, std::set< db_recno_t > &recnoList, AlgoParam *param) | AceWriter | [inline] |
| Algo(TrapperDoc *pDoc_, std::set< db_recno_t > &recnoList, AlgoParam *param=0, QObject *parent=0, const char *name=0) | Algo | |
| get_consensus(std::vector< char > &cons, std::vector< int > &rowVec, int &num) | AceWriter | [private] |
| get_realignment_row(const int row, std::vector< char > &aligned_read, int &row_start) | AceWriter | [private] |
| getMAl() | RAlgo | [inline] |
| my_param | Algo | [protected] |
| pDoc | Algo | [protected] |
| RAlgo(TrapperDoc *pDoc_, std::set< db_recno_t > &recnoList, AlgoParam *param) | RAlgo | |
| select(db_recno_t recno, bool status) | Algo | |
| selectedReads | Algo | [protected] |
| start() | AceWriter | [virtual] |
| write_ace_file() | AceWriter | [private] |
| ~Algo() | Algo | [virtual] |
| ~RAlgo() | RAlgo | [inline] |
