trashremovealgo.cc

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#include "trashremovealgo.h"

void TrashRemoveAlgo::start()
{
  if ( getMAl()->get_num_seq() == 0 ) {
//     cerr<<"Nothing to be done here! "<<endl;
    return;
  }

  //This can be done much more efficiently, removing stuff 
  //directly in the db instead. Oh, well...

  int num(0);
  for( size_t i = 0; i < getMAl()->get_num_seq(); i++ ) {
    getMAl()->set_beginGood(i, 0);
    getMAl()->set_endGood(i, getMAl()->get_seq_end(i));
    
  }

}

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