printalgo.cc

Go to the documentation of this file.

#include "printalgo.h"
#include <fstream>

using namespace std;

void PrintAlgo::start()
{
  ofstream outFile("alignment.out");
  
  for( size_t i = 0; i < getMAl()->get_num_seq(); i++ ) {
    for( size_t j = 0; j < getMAl()->get_seq_begin_global(i); j++ ) {
      outFile<<' ';
    }
    for( size_t j = 0; j < getMAl()->get_seq_end(i); j++ ) {
      outFile<<getMAl()->get_base(i, j);
    }
    outFile<<endl;
  }
  
  
  outFile.close();
  
}

---