dnpsort.h

Go to the documentation of this file.

#ifndef TRAPPER_DNPSORT_H
#define TRAPPER_DNPSORT_H

#include <map>
#include <set>
#include <vector>
#include "RW_algo.h"

class DnpSortAlgo : public RWAlgo
{
public:
  DnpSortAlgo(TrapperDoc * pDoc_, std::set< db_recno_t >& recnoList, AlgoParam* param) : 
    RWAlgo(pDoc_, recnoList, param) {}
  
  void start();
  void init();
  bool dnpDone( int dnp_id );

private:
  typedef std::map<int, std::set<size_t> > MapSet;
  MapSet dnpID_to_readID;

  typedef std::vector<std::set<int> > VectorSet;
  VectorSet readID_to_dnpID;
  
  vector<bool> used_reads;
  
};

#endif //TRAPPER_DNPSORT_H
 

---