base_index | MAl_addon | [private] |
consensus | MAl_addon | [private] |
get_entry(int row, int col) | MAl_addon | |
get_max_col() | MAl_addon | |
get_min_col() | MAl_addon | |
get_most_freq_base_on_col(int col) | MAl_addon | |
get_num_bases_on_col(int col, char base) | MAl_addon | |
get_num_DNPs_on_col(int col) | MAl_addon | |
get_num_rows() | MAl_addon | |
get_qual(int row, int col) | MAl_addon | |
get_row_end(int row) | MAl_addon | |
get_row_start(int row) | MAl_addon | |
index_base | MAl_addon | [private] |
is_DNP(int row, int col) | MAl_addon | |
mal | MAl_addon | [private] |
MAl_addon(MAl *m) | MAl_addon | |
max_col | MAl_addon | [private] |
min_col | MAl_addon | [private] |
set_DNP(int row, int col, bool status, int dnpID, int type) | MAl_addon | |
~MAl_addon() | MAl_addon |