MAlWrapper< alphabet > Member List

This is the complete list of members for MAlWrapper< alphabet >, including all inherited members.

adjust_last_pos(size_t r, int steps, int)	MAlWrapper< alphabet >	[inline]
adjust_pos_right_of_band_border(int d, int band_border_right)	MAlWrapper< alphabet >	[inline]
begin(size_t r)	MAlWrapper< alphabet >	[inline]
begin_global(size_t r)	MAlWrapper< alphabet >	[inline]
decrement_first_pos(size_t r)	MAlWrapper< alphabet >	[inline]
decrement_last_pos(size_t r)	MAlWrapper< alphabet >	[inline]
empty(int row)	MAlWrapper< alphabet >	[inline]
end(size_t r)	MAlWrapper< alphabet >	[inline]
end_global(size_t r)	MAlWrapper< alphabet >	[inline]
erase(size_t r, iterator pos)	MAlWrapper< alphabet >	[inline]
first_pos(size_t r)	MAlWrapper< alphabet >	[inline]
first_pos_global(size_t r)	MAlWrapper< alphabet >	[inline]
getMaxStopCol()	MAlWrapper< alphabet >	[inline]
getMaxStopCol(int realRow)	MAlWrapper< alphabet >	[inline]
getMinStartCol()	MAlWrapper< alphabet >	[inline]
getMinStartCol(int realRow)	MAlWrapper< alphabet >	[inline]
insert(size_t r, iterator pos, const value_type &v)	MAlWrapper< alphabet >	[inline]
iterator typedef	MAlWrapper< alphabet >
last_pos(size_t r)	MAlWrapper< alphabet >	[inline]
last_pos_global(size_t r)	MAlWrapper< alphabet >	[inline]
left_fixed(size_t r)	MAlWrapper< alphabet >	[inline]
mal_	MAlWrapper< alphabet >	[private]
MAlWrapper(MAl *mal)	MAlWrapper< alphabet >	[inline]
move_read_left(size_t r, int steps)	MAlWrapper< alphabet >	[inline]
move_read_right(size_t r, int steps)	MAlWrapper< alphabet >	[inline]
nrows()	MAlWrapper< alphabet >	[inline]
nrows_global()	MAlWrapper< alphabet >	[inline]
operator()(size_t r, size_t pos_in_read)	MAlWrapper< alphabet >	[inline]
others_left_fixed(size_t r)	MAlWrapper< alphabet >	[inline]
others_right_fixed(size_t r)	MAlWrapper< alphabet >	[inline]
print_info(size_t r)	MAlWrapper< alphabet >	[inline]
realign_in_band()	MAlWrapper< alphabet >	[inline]
realign_in_band_	MAlWrapper< alphabet >	[private]
reference typedef	MAlWrapper< alphabet >
right_fixed(size_t r)	MAlWrapper< alphabet >	[inline]
set_realign_in_band(bool b)	MAlWrapper< alphabet >	[inline]
swap(size_t r, int first_pos, int last_pos, const std::string &new_read)	MAlWrapper< alphabet >	[inline]
swap_prefix(size_t r, int first_pos, int last_pos, std::string &other_read)	MAlWrapper< alphabet >	[inline]
swap_substr(size_t r, std::string &other_read)	MAlWrapper< alphabet >	[inline]
swap_suffix(size_t r, int first_pos, int last_pos, std::string &other_read)	MAlWrapper< alphabet >	[inline]
value_type typedef	MAlWrapper< alphabet >

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