| Algo(TrapperDoc *pDoc_, std::set< db_recno_t > &recnoList, AlgoParam *param=0, QObject *parent=0, const char *name=0) | Algo | |
| check_qual_in_win(int start, int stop, int ID, int &curr_win_good) | TrashAlgo | |
| decode_qualval_square | TrashAlgo | [private] |
| getMAl() | RWAlgo | [inline] |
| GOOD_PERCENTAGE | TrashAlgo | [private] |
| kill_read(int ID) | TrashAlgo | |
| logQual_to_quality | TrashAlgo | [private] |
| MAX_VARIANCE_IN_QUALWIN | TrashAlgo | [private] |
| MIN_LEN_GOOD | TrashAlgo | [private] |
| MIN_NUM_ADJ_WIN_GOOD | TrashAlgo | [private] |
| my_param | Algo | [protected] |
| pDoc | Algo | [protected] |
| RWAlgo(TrapperDoc *pDoc_, std::set< db_recno_t > &recnoList, AlgoParam *param) | RWAlgo | |
| select(db_recno_t recno, bool status) | Algo | |
| selectedReads | Algo | [protected] |
| start() | TrashAlgo | [virtual] |
| trash(size_t seqNumber) | TrashAlgo | |
| TRASH_WINDOW_LEN | TrashAlgo | [private] |
| TRASH_WINDOW_STEP | TrashAlgo | [private] |
| TrashAlgo(TrapperDoc *pDoc_, std::set< db_recno_t > &recnoList, AlgoParam *param) | TrashAlgo | [inline] |
| ~Algo() | Algo | [virtual] |
| ~RWAlgo() | RWAlgo | [inline] |
