TrapperView Class Reference

The view to graphically present the reads and their features. The user will mainly interact with this window. More...

#include <trapperview.h>

Collaboration diagram for TrapperView:

[legend]List of all members.

Public Slots
void	slotSwitchToMode (int i)
void	slotStartAlgo (int i)
void	slotScrollToMouse ()
void	slotScrollToPos ()
void	slotSetCenter ()
void	slotClearCenter ()
Signals
void	createView (QString)
void	message (const QString &)
Public Member Functions
	TrapperView (TrapperDoc *pDoc, QWidget *parent, const char *name, QString _viewMode=QString("everything"))
	~TrapperView ()
TrapperDoc *	getDocument () const
void	update (TrapperView *pSender)
void	print (QPrinter *pPrinter)
QString	mode ()
void	zoomIn ()
void	zoomInX ()
void	zoomInY ()
void	zoomOut ()
void	zoomOutX ()
void	zoomOutY ()
void	selectAll ()
void	selectBetween ()
void	findRead ()
void	enlarge ()
void	shrink ()
void	setDragMode (bool status)
void	copy ()
void	paste ()
void	cut ()
void	undo ()
TR_DNA	mousePressedRow ()
TR_DNA	mousePressedCol ()
void	sendMsg (const QString &msg)
Protected Types
typedef std::set< db_recno_t >	RecnoMap
Protected Member Functions
void	contentsDragEnterEvent (QDragEnterEvent *event)
void	contentsDropEvent (QDropEvent *event)
void	contentsMouseMoveEvent (QMouseEvent *e)
void	contentsMouseReleaseEvent (QMouseEvent *e)
void	contentsContextMenuEvent (QContextMenuEvent *e)
void	contentsMousePressEvent (QMouseEvent *e)
void	contentsDragMoveEvent (QDragMoveEvent *)
virtual void	closeEvent (QCloseEvent *)
void	doZoom ()
void	scrollTo (TR_PIX x, TR_PIX y)
void	drawContents (QPainter *p, TR_PIX cx, TR_PIX cy, TR_PIX cw, TR_PIX ch)
void	drawContents_helper (QPainter *p, QPainter *bitmapPainter, int cx, int cy, int cw, int ch, int dx, int dy)
	paint a rectangle of the window
void	paintFeatures (QPainter *p, QPainter *bitmapPainter, db_recno_t readRecno, TR_PIX x_pix, TR_PIX y_pix, TR_DNA x_dna_relative, TR_DNA dna_len, double width, TR_PIX height, bool selected, int center_relative, bool overlap, TR_DNA bg, TR_DNA eg)
	paint border line around the read rectangle. Then divide the rectangle into layers and paint features of the read into these layers.
void	paintGrid (QPainter *p, TR_PIX cx, TR_PIX cy, TR_PIX cw, TR_PIX ch)
	paint some extra dots in the background of the window. These will move along when the user scrolls. Nice to have some visual feedback of movement when there are no reads in the window
void	convertToPixelCoordinates (TR_PIX &x_pix, TR_PIX &y_pix, TR_DNA x_dna, TR_DNA y_dna)
void	convertToDnaCoordinates (TR_DNA &x_dna, TR_DNA &y_dna, const TR_PIX cx, const TR_PIX cy)
TR_PIX	dnaCoordToPixel_X (TR_DNA cx)
TR_PIX	dnaCoordToPixel_Y (TR_DNA cy)
TR_DNA	pixelCoordToDna_X (TR_PIX x_dna)
TR_DNA	pixelCoordToDna_Y (TR_PIX y_dna)
std::set< db_recno_t > &	getSelectedReads ()
void	select (db_recno_t recno, bool status)
bool	isSelected (db_recno_t recno)
void	clearSelected ()
std::vector< std::list< std::string > >	getInfo (const QPoint &pos)
void	runAlgo (const std::string &AlgoType, std::set< db_recno_t > &recnoList, AlgoParam *param=0)
void	writeSelected (QDataStream &data_stream)
void	readSelected (QDataStream &data_stream)
void	moveData (TR_PIX dx, TR_PIX dy)
void	fitContentsizeToData ()
void	clearLastMove ()
Protected Attributes
TR_PIX	basewidth
TR_PIX	spaceBetweenRows
TR_PIX	rowheight
TR_DNA	globalRows
TR_DNA	globalBases
TR_DNA	center_point
TrapperDoc *	doc
QLabel *	lab
double	magnifyX
u_int16_t	magnifyY
int	zoomfactor
ViewModes *	viewModes
QPopupMenu *	switchViewMenu
QPopupMenu *	algoMenu
QPopupMenu *	infoMenu
std::set< db_recno_t >	selectedReads
std::map< std::string, int >	zoom_cutoff
ReadsInRect *	readsInRect
bool	dragging
bool	allow_dragging
bool	moving
bool	last_click_selected_read
bool	last_click_changed_selection
db_recno_t	last_selected_recno
QPoint	curr_mouse_pos
TR_PIX	y_delta
TR_PIX	y_delta_previous
TR_DNA	last_move_x
TR_DNA	last_move_y
Private Member Functions
void	drawRubber (QPainter *p)
Private Attributes
QPixmap	dragPixmap
QBitmap	dragBitmap
QPainter	p3
QPoint	mousePressedPoint
QPoint	dragWindowPoint
QRect *	rubber_band
QPoint	RubberStart
QPoint	RubberEnd
bool	RubberOn
QPoint	oldMovePoint
bool	moveOn
Friends
class	TrapperDoc

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Detailed Description

The view to graphically present the reads and their features. The user will mainly interact with this window.

Functionality given to the user: Scrolling, zooming, drag and drop of the reads to move them around, selecting reads and start algorithms.

This software is designed to have totally decoupled view and data classes. The view is stateless ( it does not store any data ) and will for every update newly read in all data needed to paint up the view. In other words, the view does not cash anything.

This has some nice implications: Data algorithm classes will work directly with the data classes and will not be aware of any views. Any number of views can be opened up and they will be independent and will not be aware of each other.

For it to be possible to take this design approach the data classes must respond quickly to queries because any delay here will make the views appear sluggish. Scrolling will here be the toughest test for the speed of the data class queries. Because by scrolling, new data should be painted very fast to the view. The user would not like big delays here.

To make the data class queries very fast, the data is stored in the embedded database Berkeley Db.

About how the reads and features get shown in TrapperView: TrapperView is inherited from QScrollView. QScrollView gives us the scroll bars and also gives convertion methods between the coordinate system of the actual window ( the viewport ) and the coordinate system of the content window ( the big window the user has to scroll to see all of it ). QScrollView gives us the possibility to place out "static" widgets on the content window, and QScrollView would then handle the scrolling automatically. But we would like a totally stateless view so we take another approach. We reimplement the virtual method drawContents() that is called everytime some part of the window should be painted, e.g. when the user has dragged the scrollbars. The method drawContents() takes as arguments the "content" pixel coordinates of a rectangle to be painted. Some background pixels are painted to enhance the "movement feeling" when scrolling. Then drawContents_helper() is called ( which is also is reused when painting reads in a drag & drop ). In drawContents_helper() we first convert to DNA coordinates, i.e. the x-axis unit is a nucleotid-base and the y-axis unit is a row. We then use the class ReadsInRect that can tell us which reads are visible in our painting rectangle. Now paintFeatures() is called for each read. In paintFeatures(), features for the read are painted in different layers inside the read rectangle.

Definition at line 115 of file trapperview.h.

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Member Typedef Documentation

typedef std::set<db_recno_t> TrapperView::RecnoMap [protected]

Definition at line 280 of file trapperview.h.

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Constructor & Destructor Documentation

TrapperView::TrapperView (  TrapperDoc *  pDoc, QWidget *  parent, const char *  name, QString  _viewMode = QString("everything") )

Constructor for the view Parameters: pDoc  your document instance that the view represents. Create a document before calling the constructor or connect an already existing document to a new MDI child widget. Definition at line 71 of file trapperview.cpp. References allow_dragging, basewidth, center_point, doc, dragging, fitContentsizeToData(), globalBases, globalRows, last_click_changed_selection, last_click_selected_read, GeneralMaker::listRegistered(), magnifyX, magnifyY, moving, rowheight, rubber_band, spaceBetweenRows, viewModes, zoom_cutoff, and zoomfactor. : QScrollView(parent, name,/** wflags**/ WResizeNoErase|WStaticContents|WDestructiveClose/*|WNoAutoErase*/), doc( pDoc ) { // cerr << "in TrapperView::TrapperView" << endl; // cerr<<"doc: "<<doc<<endl; viewport()->setAcceptDrops( true ); setDragAutoScroll( true ); allow_dragging = true; dragging = false; moving = false; rubber_band = 0; last_click_selected_read = false; last_click_changed_selection = false; if ( _viewMode.isNull() ) { _viewMode = "closeup"; } viewModes = new ViewModes( _viewMode, doc ); //Ugly business here... list<string> type_list = GeneralMaker::listRegistered(); for( list<string>::iterator it = type_list.begin(); it != type_list.end(); ++it ) { zoom_cutoff[ *it ] = 0; } zoom_cutoff["DnaStrData"] = 4; zoom_cutoff["QualityData"] = 4; zoom_cutoff["ChromatData"] = 8; // globalRows = 1000; // globalBases = 50000; globalRows = 50; globalBases = 2000; // rowheight = 20; // basewidth = 10; rowheight = 5; basewidth = 1; magnifyX = magnifyY = 1; zoomfactor = 2; spaceBetweenRows = 0; center_point = 0; fitContentsizeToData(); viewport()->setPaletteBackgroundColor(white); viewport()->setBackgroundMode( Qt::FixedColor ); setCaption( "yes" ); viewport()->setMouseTracking(TRUE); }

TrapperView::~TrapperView (   )

Destructor for the main view Definition at line 126 of file trapperview.cpp. References viewModes. { if ( viewModes ) { delete viewModes; viewModes = NULL; } }

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Member Function Documentation

void TrapperView::clearLastMove (   )  [protected]

Definition at line 566 of file trapperview.cpp. References last_move_x, and last_move_y. Referenced by clearSelected(), readSelected(), select(), and slotStartAlgo(). { last_move_x = last_move_y = 0; }

void TrapperView::clearSelected (   )  [protected]

Definition at line 1139 of file trapperview.cpp. References clearLastMove(), and selectedReads. Referenced by contentsMousePressEvent(), contentsMouseReleaseEvent(), cut(), findRead(), readSelected(), selectAll(), and selectBetween(). { selectedReads.clear(); clearLastMove(); }

void TrapperView::closeEvent (  QCloseEvent *   )  [protected, virtual]

Definition at line 190 of file trapperview.cpp. { // LEAVE THIS EMPTY: THE EVENT FILTER IN THE TrapperApp CLASS TAKES CARE FOR CLOSING // QWidget closeEvent must be prevented. }

void TrapperView::contentsContextMenuEvent (  QContextMenuEvent *  e  )  [protected]

Definition at line 907 of file trapperview.cpp. References algoMenu, AlgoMaker::algosRegistered(), getInfo(), infoMenu, TrapperConf::instance(), last_click_changed_selection, last_click_selected_read, moving, slotClearCenter(), slotScrollToMouse(), slotScrollToPos(), slotSetCenter(), slotStartAlgo(), slotSwitchToMode(), switchViewMenu, and TrapperConf::viewModeNames(). { if ( last_click_changed_selection ) { updateContents(); } moving = false; last_click_selected_read = false; last_click_changed_selection = false; QPopupMenu* contextMenu = new QPopupMenu( this ); Q_CHECK_PTR( contextMenu ); QLabel *caption = new QLabel( "<font color=darkblue><u><b>" "Context Menu</b></u></font>", this ); caption->setAlignment( Qt::AlignCenter ); contextMenu->insertItem( caption ); //Algo stuff algoMenu = new QPopupMenu( this ); Q_CHECK_PTR( algoMenu ); list<string> algos = AlgoMaker::algosRegistered(); list<string>::iterator stIt; for (stIt = algos.begin() ; stIt != algos.end(); ++stIt ) { algoMenu->insertItem ( stIt->c_str() ); } connect( algoMenu, SIGNAL( activated( int ) ), this, SLOT( slotStartAlgo( int ) ) ); contextMenu->insertItem( "&Operations", algoMenu ); //Info stuff infoMenu = new QPopupMenu(this); vector<list<string> > infos = getInfo( e->pos() ); QPtrList<QPopupMenu> infolist; infolist.setAutoDelete( true ); for( size_t i = 0; i < infos.size(); i++ ) { stIt = infos[i].begin(); if ( stIt == infos[i].end() ) continue; infolist.append(new QPopupMenu(this)); ++stIt; for ( ; stIt != infos[i].end(); ++stIt ) { // infoMenu->insertItem ( stIt->c_str() ); infolist.last()->insertItem ( stIt->c_str() ); } infoMenu->insertItem(infos[i].begin()->c_str(), infolist.last()); } //No connecting here, 'cause only info... contextMenu->insertItem( "&Info", infoMenu ); //Viewmode stuff switchViewMenu = new QPopupMenu( this ); Q_CHECK_PTR( switchViewMenu ); TrapperConf * conf = TrapperConf::instance(); QStringList names = conf->viewModeNames(); QStringList::Iterator it = names.begin(); for ( ; it != names.end(); ++it ) { switchViewMenu->insertItem ( *it ); } connect( switchViewMenu, SIGNAL( activated( int ) ), this, SLOT( slotSwitchToMode( int ) ) ); contextMenu->insertItem( "&Switch to viewmode", switchViewMenu ); contextMenu->insertSeparator(); contextMenu->insertItem("Set chromat center", this, SLOT(slotSetCenter())); contextMenu->insertItem("Clear chromat center", this, SLOT(slotClearCenter())); contextMenu->insertSeparator(); contextMenu->insertItem("Scroll Here", this, SLOT(slotScrollToMouse()) ); contextMenu->insertItem("Scroll to pos", this, SLOT(slotScrollToPos()) ); contextMenu->exec( QCursor::pos() ); delete contextMenu; delete switchViewMenu;//Previous memory leak?? delete algoMenu; delete infoMenu; }

void TrapperView::contentsDragEnterEvent (  QDragEnterEvent *  event  )  [protected]

Definition at line 1448 of file trapperview.cpp. { // cerr << "in TrapperView::dragEnterEvent" << endl; event->accept( TRUE ); }

void TrapperView::contentsDragMoveEvent (  QDragMoveEvent *   )  [protected]

Definition at line 1456 of file trapperview.cpp. { // e->setPoint( QPoint( mousePressedPoint.x(), e->pos().y() ) ); // cerr << "in TrapperView::dragMoveEvent" << endl; // cerr<<"x(): "<<e->pos().x()<<endl; // cerr<<"y(): "<<e->pos().y()<<endl; }

void TrapperView::contentsDropEvent (  QDropEvent *  event  )  [protected]

Definition at line 1467 of file trapperview.cpp. References convertToDnaCoordinates(), getDocument(), mousePressedPoint, moveData(), readSelected(), and TR_DNA. { // cerr << "in TrapperView::dropEvent" << endl; QPoint deltaMovement = event->pos() - mousePressedPoint; TR_DNA x_dna_movDelta; TR_DNA y_dna_movDelta; convertToDnaCoordinates( x_dna_movDelta, y_dna_movDelta, deltaMovement.x(), deltaMovement.y() ); // cerr << "dropped happened with delta x=" << x_dna_movDelta << " y=" << y_dna_movDelta << endl; TrapperView* w = dynamic_cast<TrapperView*>( event->source() ); if ( !w) { //Drop from another app... return; } assert(w); if ( w->getDocument() == this->getDocument() ) { moveData( deltaMovement.x(), deltaMovement.y() ); } else { QByteArray ar( event->encodedData("min_mime_type") ); QDataStream data_stream(ar, IO_ReadOnly); readSelected(data_stream); updateContents(); } }

void TrapperView::contentsMouseMoveEvent (  QMouseEvent *  e  )  [protected]

Definition at line 720 of file trapperview.cpp. References allow_dragging, curr_mouse_pos, dragging, dragPixmap, dragWindowPoint, drawContents_helper(), drawRubber(), last_click_selected_read, mousePressedPoint, moving, pixelCoordToDna_X(), pixelCoordToDna_Y(), rubber_band, RubberEnd, RubberOn, sendMsg(), writeSelected(), y_delta, and y_delta_previous. { QString msg = "Row: " + QString().setNum(pixelCoordToDna_Y(e->y())) + ", col: " + QString().setNum(pixelCoordToDna_X(e->x())); sendMsg( msg ); bool nobutton = Qt::NoButton & e->state(); if ( nobutton ) { moving = false; return; } if ( allow_dragging && dragging ) { // if ( dragging ) { // cerr<<"Dragging..."<<endl; ReadDrag *d = new ReadDrag( dragPixmap, dragWindowPoint, this ); // QCString ar("hej"); QByteArray ar; QDataStream data_stream(ar, IO_WriteOnly); writeSelected(data_stream); d->setEncodedData(ar); d->dragCopy(); // do NOT delete d. dragging = FALSE; moving = false; last_click_selected_read = false; // cerr<<"Stopped dragging"<<endl; } else if ( last_click_selected_read ) { // else if ( !selectedReads.empty() ) { //"Normal" moving moving = true; curr_mouse_pos = e->pos();//Don't really need this?? // y_delta = pixelCoordToDna_Y( (curr_mouse_pos - mousePressedPoint).y() ); y_delta = (curr_mouse_pos - mousePressedPoint).y(); if ( pixelCoordToDna_Y( y_delta) == pixelCoordToDna_Y( y_delta_previous ) ) { // moving = false; return; } y_delta_previous = y_delta; //MOVINGTEST QPainter p(viewport()); drawContents_helper(&p, 0,0,0,0,0,0,0); return; //END MOVINGTEST updateContents(); } else if ( rubber_band != 0 ) { //RUBBERTEST QPainter p(viewport()); p.setPen(QColor(255,255,255)); p.setRasterOp(NotROP); if(RubberOn) drawRubber(&p); RubberEnd= contentsToViewport(e->pos()); drawRubber(&p); RubberOn=TRUE; return; //END RUBBERTEST curr_mouse_pos = e->pos(); QRect oldband = rubber_band->normalize(); rubber_band->setSize( QSize( curr_mouse_pos.x() - mousePressedPoint.x(), curr_mouse_pos.y() - mousePressedPoint.y() ) ); // updateContents(); QPoint margin( 1, 1 ); QRect norm = rubber_band->normalize(); updateContents( QRect( norm.topLeft() - margin, norm.bottomRight() + margin ).unite( QRect(oldband.topLeft() - margin, oldband.bottomRight() + margin ) ) ); } }

void TrapperView::contentsMousePressEvent (  QMouseEvent *  e  )  [protected]

Definition at line 572 of file trapperview.cpp. References clearSelected(), convertToDnaCoordinates(), doc, dragBitmap, dragging, dragPixmap, dragWindowPoint, drawContents_helper(), ReadsInRect::first(), GeneralData::getRecno(), isSelected(), last_click_changed_selection, last_click_selected_read, last_selected_recno, mousePressedPoint, moveOn, moving, p3, pixelCoordToDna_X(), pixelCoordToDna_Y(), readsInRect, rubber_band, RubberEnd, RubberOn, RubberStart, select(), selectedReads, sendMsg(), ReadsInRect::setWindowCoord(), TR_DNA, y_delta, and y_delta_previous. { QString msg = "Row: " + QString().setNum(pixelCoordToDna_Y(e->y())) + ", col: " + QString().setNum(pixelCoordToDna_X(e->x())); sendMsg( msg ); y_delta = 0; y_delta_previous = 0; bool ctrlclick = Qt::ControlButton & e->state(); bool leftbutton = Qt::LeftButton & e->stateAfter(); // if ( ctrlclick ) // cerr<<"ctrlclick!!!!!!!!!!!!!! "<<endl; mousePressedPoint.setX( e->x() ); mousePressedPoint.setY( e->y() ); //RUBBERTEST RubberStart=contentsToViewport(e->pos()); RubberEnd = RubberStart; RubberOn=FALSE; //END RUBBERTEST //MOVINGTEST moveOn = false; //END MOVINGTEST TR_DNA x_dna, y_dna; convertToDnaCoordinates( x_dna, y_dna, e->x(), e->y() ); readsInRect = new ReadsInRect( doc ); // readsInRect->setWindowCoord( x_dna, y_dna, 1, 1 ); /* a rectangle with dimension 1x1 */ readsInRect->setWindowCoord( x_dna, y_dna, 3, 3 ); /* a rectangle with dimension 3x3 */ ReadData * r = readsInRect->first(); if ( r ) {//hit read if ( ctrlclick ) { if ( isSelected( r->getRecno() ) ) { select( r->getRecno(), false ); last_click_selected_read = false; last_click_changed_selection = true; } else { select( r->getRecno(), true); last_click_selected_read = true; last_selected_recno = r->getRecno(); last_click_changed_selection = true; } }//end ctrlclick else {//no ctrlclick if ( isSelected( r->getRecno() ) ) { last_click_selected_read = true; last_selected_recno = r->getRecno(); last_click_changed_selection = false; } else { clearSelected(); select( r->getRecno(), true); last_click_selected_read = true; last_selected_recno = r->getRecno(); last_click_changed_selection = true; } }//end no ctrlclick if ( last_click_selected_read ) dragging = TRUE; }// end hit read else {//didn't hit read // if ( rubber_band != 0 ) { // delete rubber_band; // } // rubber_band = new QRect( mousePressedPoint, mousePressedPoint ); if ( ctrlclick ) { last_click_selected_read = false; last_click_changed_selection = false; }//end ctrlclick else {//no ctrlclick last_click_selected_read = false; if ( selectedReads.size() > 0 ) last_click_changed_selection = true; clearSelected(); //"Rubber band" // if ( rubber_band != 0 ) { // delete rubber_band; // } // if ( leftbutton ) // rubber_band = new QRect( mousePressedPoint, mousePressedPoint ); }//end no ctrlclick if ( rubber_band != 0 ) { delete rubber_band; } if (leftbutton && !last_click_selected_read) { moving = false; rubber_band = new QRect( mousePressedPoint, mousePressedPoint ); } }//end didn't hit read // updateContents();//Removed this because of visual bug... delete readsInRect; // From here on: about Start a drag and painting { dragWindowPoint.setX( size().width() ); dragWindowPoint.setY( size().height() ); QRect re( mousePressedPoint - dragWindowPoint, mousePressedPoint + dragWindowPoint ); dragPixmap.resize( re.size() ); QPainter p2; p2.begin(&dragPixmap, this); dragBitmap.resize( re.size() ); p3.begin(&dragBitmap, this); QBrush brush; brush.setStyle( Qt::SolidPattern ); brush.setColor( Qt::white ); p2.fillRect( 0 , 0 , re.width() , re.height() ,brush) ; brush.setColor( Qt::color0 ); p3.fillRect( 0 , 0 , re.width() , re.height() ,brush) ; QPoint tl = re.topLeft() ; QPoint br = re.bottomRight() ; drawContents_helper(&p2, &p3, tl.x(), tl.y(), br.x() - tl.x() + 1, br.y() - tl.y() + 1, - ( mousePressedPoint.x() - dragWindowPoint.x() ), - ( mousePressedPoint.y() - dragWindowPoint.y() )); //Test: // QPen a_pen; // p2.setPen(a_pen); // p2.drawRect(dragPixmap.rect()); // a_pen.setColor(Qt::color1); // p3.setPen(a_pen); // p3.drawRect(dragPixmap.rect()); //End test dragPixmap.setMask(dragBitmap); p2.end(); p3.end(); } }

void TrapperView::contentsMouseReleaseEvent (  QMouseEvent *  e  )  [protected]

Definition at line 804 of file trapperview.cpp. References clearSelected(), convertToDnaCoordinates(), doc, dragging, drawRubber(), ReadsInRect::first(), last_click_changed_selection, last_click_selected_read, last_selected_recno, moveData(), moveOn, moving, ReadsInRect::next(), readsInRect, rubber_band, RubberEnd, RubberOn, RubberStart, select(), ReadsInRect::setWindowCoord(), TR_DNA, TR_PIX, and y_delta. { dragging = false; //Maybe dragging code here? NO! if ( moving ) { //Moving stuff... moveData(0, y_delta); //MOVINGTEST if(moveOn) { updateContents(); moveOn=FALSE; } //END MOVINGTEST moving = false; } else { //not moving bool ctrlclick = Qt::ControlButton & e->state(); if ( !ctrlclick && last_click_selected_read ) { clearSelected(); select( last_selected_recno, true ); last_click_changed_selection = true; // updateContents(); } if ( last_click_changed_selection ) { updateContents(); } if ( rubber_band != 0 ) { readsInRect = new ReadsInRect( doc ); TR_DNA x_dna, y_dna, w_dna, h_dna, x2_dna, y2_dna; TR_PIX x_pix, y_pix, w_pix, h_pix; QRect norm = rubber_band->normalize(); //RUBBERTEST RubberStart = viewportToContents( RubberStart ); RubberEnd = viewportToContents( RubberEnd ); norm = QRect( RubberStart.x(), RubberStart.y(), RubberEnd.x()-RubberStart.x(), RubberEnd.y()-RubberStart.y() ).normalize(); //END RUBBERTEST rubber_band->setTopLeft( norm.topLeft() ); rubber_band->setBottomRight( norm.bottomRight() ); rubber_band->rect( &x_pix, &y_pix, &w_pix, &h_pix); convertToDnaCoordinates( x_dna, y_dna, x_pix, y_pix ); convertToDnaCoordinates( x2_dna, y2_dna, x_pix + w_pix, y_pix + h_pix); w_dna = x2_dna - x_dna; h_dna = y2_dna - y_dna; readsInRect->setWindowCoord( x_dna, y_dna, w_dna,h_dna ); if ( !ctrlclick) clearSelected(); for ( ReadData * r = readsInRect->first(); r; r = readsInRect->next() ) { select( r->getRecno(), true); } //RUBBERTEST QPainter p(viewport()); p.setPen(QColor(255,255,255)); p.setRasterOp(NotROP); if(RubberOn) { drawRubber(&p); RubberOn=FALSE; } else { RubberEnd=RubberStart; } //END RUBBERTEST delete rubber_band; rubber_band = 0; delete readsInRect; updateContents(); } } moving = false; dragging = false; last_click_changed_selection = false; last_click_selected_read = false; }

void TrapperView::convertToDnaCoordinates (  TR_DNA &  x_dna, TR_DNA &  y_dna, const TR_PIX  cx, const TR_PIX  cy )  [protected]

Definition at line 196 of file trapperview.cpp. References pixelCoordToDna_X(), and pixelCoordToDna_Y(). Referenced by contentsDropEvent(), contentsMousePressEvent(), contentsMouseReleaseEvent(), and drawContents_helper(). { x_dna = pixelCoordToDna_X(cx); y_dna = pixelCoordToDna_Y(cy); return; }

void TrapperView::convertToPixelCoordinates (  TR_PIX &  x_pix, TR_PIX &  y_pix, TR_DNA  x_dna, TR_DNA  y_dna )  [protected]

Definition at line 219 of file trapperview.cpp. References dnaCoordToPixel_X(), and dnaCoordToPixel_Y(). Referenced by drawContents_helper(). { x_pix = dnaCoordToPixel_X(x_dna); y_pix = dnaCoordToPixel_Y(y_dna); return; }

void TrapperView::copy (   )

copies selected data Definition at line 1636 of file trapperview.cpp. References writeSelected(). Referenced by cut(), and TrapperApp::slotEditCopy(). { QByteArray ar; QDataStream str(ar, IO_WriteOnly); writeSelected(str); QClipboard* cb = QApplication::clipboard(); ReadDrag* r = new ReadDrag(this); r->setEncodedData(ar); cb->setData(r, QClipboard::Clipboard); }

void TrapperView::createView (  QString   )  [signal]

void TrapperView::cut (   )

cuts selected data Definition at line 1662 of file trapperview.cpp. References clearSelected(), copy(), Destroyer::destroy(), doc, and selectedReads. Referenced by TrapperApp::slotEditCut(). { copy(); Destroyer d(doc); for( set<db_recno_t>::iterator it = selectedReads.begin(); it != selectedReads.end(); ++it ) { d.destroy(*it); } clearSelected(); updateContents(); }

TR_PIX TrapperView::dnaCoordToPixel_X (  TR_DNA  cx  )  [protected]

Definition at line 226 of file trapperview.cpp. References basewidth, and magnifyX. Referenced by convertToPixelCoordinates(), findRead(), paintGrid(), readSelected(), slotScrollToPos(), and undo(). { // if ( x_dna * basewidth * magnifyX < 1 ) { // cerr<<"x_dna: "<<x_dna<<endl; // cerr<<"basewidth: "<<basewidth<<endl; // cerr<<"x_dna * basewidth * magnifyX: "<<x_dna * basewidth * magnifyX<<endl; // } return x_dna * basewidth * magnifyX; }

TR_PIX TrapperView::dnaCoordToPixel_Y (  TR_DNA  cy  )  [protected]

Definition at line 238 of file trapperview.cpp. References magnifyY, and rowheight. Referenced by convertToPixelCoordinates(), drawContents_helper(), findRead(), paintGrid(), readSelected(), slotScrollToPos(), and undo(). { return y_dna * rowheight * magnifyY; }

void TrapperView::doZoom (   )  [protected]

Definition at line 1339 of file trapperview.cpp. References basewidth, globalBases, globalRows, magnifyX, magnifyY, and rowheight. { // QPoint p = viewportToContents(viewport()->rect().topLeft()); // if ( globalBases * magnifyX * basewidth < 1 ) { // cerr<<"globalBases: "<<globalBases<<endl; // cerr<<"globalBases * magnifyX * basewidth: "<<globalBases * magnifyX * basewidth<<endl; // } resizeContents(globalBases * magnifyX * basewidth , globalRows * rowheight * magnifyY); // QPoint p = viewportToContents(viewport()->rect().center()); // center( p.x()* factor , p.y()*factor ); // setContentsPos(p.x()*zoomfactor, p.y()*zoomfactor); // setContentsPos(p.x(), p.y()); updateContents(); }

void TrapperView::drawContents (  QPainter *  p, TR_PIX  cx, TR_PIX  cy, TR_PIX  cw, TR_PIX  ch )  [protected]

Definition at line 373 of file trapperview.cpp. References drawContents_helper(), and paintGrid(). { // QPoint qp = viewportToContents(viewport()->rect().topLeft()); // cerr<<"qp.x(): "<<qp.x()<<endl; // cerr<<"qp.y(): "<<qp.y()<<endl; drawContents_helper(p, NULL, cx, cy, cw, ch, 0, 0); paintGrid( p, cx, cy, cw, ch); }

void TrapperView::drawContents_helper (  QPainter *  p, QPainter *  bitmapPainter, int  cx, int  cy, int  cw, int  ch, int  dx, int  dy )  [protected]

paint a rectangle of the window Parameters: p  where to paint to bmp  where to paint a bitmask, we paint to the bitmask on the same places as we paint to p. cx  x coordinate of rectangle in "content" coordinate system cy  y coordinate of rectangle in "content" coordinate system cw  width of rectangle in "content" coordinate system ch  height of rectangle in "content" coordinate system dx  displace painting with this dy  displace painting with this Definition at line 383 of file trapperview.cpp. References basewidth, center_point, convertToDnaCoordinates(), convertToPixelCoordinates(), dnaCoordToPixel_Y(), doc, dragPixmap, dragWindowPoint, ReadsInRect::first(), isSelected(), magnifyX, magnifyY, mousePressedPoint, moveOn, mov